That's true. FSU has the advantage. However, they hadn't been this dominate home team this year. I will say they grossly underachieved, and them winning shouldn't suprise anyone. I agree about the conference championships.
Another thing about the non-title BCS games. It's not a great system, but the BCS main and really only priority is to set up the championship game. Who ends up in th Fiesta, Orange is more or less about the money. When it's not determing, the national champion I don't have a problem with it.
The overall bowls. I'd like to see each conference keep say three bowls. Than every few years, switch off between conferences. I'd also like to see a minimum of 7 wins, if that doesn't work than you need to have a winning conf. record.
Change the Rose Bowl back to a degree. If a Big 10 or Pac 10 team is 1 or 2, they play in another BCS game, if you have another Big 10 or Pac 10 team inside the BCS Top 10.