I try not to over analyze movies to much. I enjoyed the Matrix: Reloaded very much. and took it for what it was worth, i don't mind people complaining about plotholes etc, but would prefer it if people waited until they had seen The Matrix: Revolutions in November before passing a judgement on these things. 
  
But reading that article has made me think, how it could of been better, byt complaining is not going to alter the movie and hopefull when we get to November we will all be plesently suprised.